Compute summary statistics for a single clonal CN matrix — summarise_clone • bridges

Compute summary statistics for a single clonal CN matrix

Usage

summarise_clone(cna_matrix, hotspot_col, base_value = 1, n_alive = NA)

Arguments

cna_matrix: Integer matrix (cells x bins) from simulate_clone().
hotspot_col: Column index of the hotspot bin in cna_matrix.
base_value: Baseline (diploid) copy number: 1 for allele-specific, 2 for CN.
n_alive: Number of alive cells before subsampling (from simulate_clone()$n_alive). Stored as-is for downstream analysis.

Value

Named numeric vector of summary statistics.